BtaEX0037533 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012622 | TRA2A
Description
Bos taurus transformer 2 alpha homolog (Drosophila) (TRA2A), mRNA. [Source:RefSeq mRNA;Acc:NM_001046380]
Coordinates
chr4:32252192-32255295:-
Coord C1 exon
chr4:32255107-32255295
Coord A exon
chr4:32253288-32253403
Coord C2 exon
chr4:32252192-32252317
Length
116 bp
Sequences
Splice sites
3' ss Seq
GTGCCTGTTCTCTTTTATAGGCT
3' ss Score
11.39
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
Exon sequences
Seq C1 exon
GCAAATCCTGATCCCAATACTTGTCTAGGAGTGTTTGGCCTCAGTTTGTACACAACAGAGAGAGATCTTCGCGAAGTATTTTCTCGATATGGACCATTGAGTGGTGTCAATGTGGTTTATGACCAGCGAACTGGACGGTCACGGGGATTTGCTTTTGTTTATTTCGAGAGAATAGATGACTCAAAGGAG
Seq A exon
GCTATGGAAAGGGCAAATGGAATGGAACTGGATGGTAGAAGAATTCGGGTGGATTATTCTATCACTAAGAGAGCACACACACCAACACCAGGCATATACATGGGCAGACCAACTCA
Seq C2 exon
CAGTGGTGGCGGCGGCGGCGGCGGCGGTGGTGGAGGTGGAGGAGGTGGCAGACGTCGAGATTCTTACTATGATCGAGGATATGATCGTGGGTACGACAGATATGAAGACTATGATTACCGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012622-'10-10,'10-9,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.692 C2=0.698
Domain overlap (PFAM):
C1:
PF086487=DUF1777=PD(17.7=36.5),PF0007617=RRM_1=PU(83.1=85.7)
A:
PF0007617=RRM_1=PD(21.1=38.5)
C2:
NO
Main Skipping Isoform:
ENSBTAT00000016756fB7334
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTGTTTGGCCTCAGTTTG
R:
ACCCACGATCATATCCTCGATCA
Band lengths:
255-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development