RnoEX0093149 @ rn6
Exon Skipping
Gene
ENSRNOG00000009156 | Tra2a
Description
transformer 2 alpha homolog [Source:RGD Symbol;Acc:1562563]
Coordinates
chr4:78907083-78910223:-
Coord C1 exon
chr4:78910035-78910223
Coord A exon
chr4:78908290-78908405
Coord C2 exon
chr4:78907083-78907217
Length
116 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTTTTTCTCTTGTAGGCT
3' ss Score
12.05
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
Exon sequences
Seq C1 exon
GCAAACCCAGATCCTAACACTTGCCTGGGAGTATTTGGCCTCAGTCTGTATACAACAGAGAGAGATCTTCGTGAAGTTTTTTCTCGATATGGACCTCTGAGTGGTGTTAATGTGGTTTATGATCAGCGAACTGGGAGGTCACGCGGGTTTGCTTTTGTGTATTTTGAGAGGATAGATGACTCTAAGGAG
Seq A exon
GCTATGGAAAGAGCAAATGGGATGGAGCTGGATGGTAGAAGAATTCGTGTGGATTATTCTATCACCAAGAGAGCACACACACCTACACCAGGCATTTACATGGGCAGACCAACTCA
Seq C2 exon
CAGTGGTGGTGGAGGTGGCGGAGGAGGAGGTGGTGGCGGCGGTGGTGGTGGAGGTGGTAGACGGCGAGATTCTTACTACGATAGAGGATATGATCGAGGCTATGACAGATATGAAGATTATGATTACCGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009156-'14-14,'14-12,19-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=0.769 C2=0.717
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(76.1=85.7)
A:
PF0007617=RRM_1=PD(21.1=38.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAACACTTGCCTGGGAGT
R:
AATCTCGCCGTCTACCACCTC
Band lengths:
249-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]