DreEX0080929 @ danRer10
Exon Skipping
Gene
ENSDARG00000007863 | tra2a
Description
transformer 2 alpha homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-1391]
Coordinates
chr19:20600627-20603100:+
Coord C1 exon
chr19:20600627-20600815
Coord A exon
chr19:20602780-20602895
Coord C2 exon
chr19:20602978-20603100
Length
116 bp
Sequences
Splice sites
3' ss Seq
ACATTTTCCTCTCACCTTAGGCA
3' ss Score
9.93
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GCCAATCCGGACCCCAATACATGTCTTGGTGTGTTTGGTCTCAGTCTGTACACGACAGAGCGAGACCTGAGAGAAGTTTTCTCACGTTACGGCTCTTTAGCCGGTGTCAATGTTGTCTATGATCAGAGAACAGGACGCTCTCGCGGATTTGCCTTTGTATACTTTGAACACATCGATGATGCCAAAGAG
Seq A exon
GCAATGGAGCGGGCTAATGGCATGGAACTAGATGGAAGACGCATCAGGGTGGATTATTCCATCACTAAACGTCCACACACACCCACACCAGGCATTTACATGGGTCGACCAACACA
Seq C2 exon
TAATGGAGGTGGTGGTGGAGGCGGCGGCAGCAGCAGCGGTGGCCGGAGACGAGACTCGTATTATGATCGTGGCTATGATCGCGGCTATGATCGTGGATATGACGAGTATGACTACAGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007863-'12-10,'12-9,16-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=0.708 C2=0.738
Domain overlap (PFAM):
C1:
PF086487=DUF1777=PD(16.9=41.3),PF0007617=RRM_1=PU(76.1=85.7)
A:
PF0007617=RRM_1=PD(21.1=38.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACACGACAGAGCGAGACC
R:
TATCCACGATCATAGCCGCGA
Band lengths:
242-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]