GgaEX1060134 @ galGal4
Exon Skipping
Gene
ENSGALG00000010973 | TRA2A
Description
transformer-2 protein homolog alpha [Source:RefSeq peptide;Acc:NP_001006360]
Coordinates
chr2:31414740-31423386:-
Coord C1 exon
chr2:31423198-31423386
Coord A exon
chr2:31416160-31416275
Coord C2 exon
chr2:31414740-31414807
Length
116 bp
Sequences
Splice sites
3' ss Seq
ATTCCTTCTCTTTCCCGCAGGCA
3' ss Score
13.27
5' ss Seq
GCAGTAAGG
5' ss Score
4.69
Exon sequences
Seq C1 exon
GCTAATCCAGATCCAAATACGTGTCTTGGAGTGTTTGGTCTCAGTTTATACACCACTGAGAGAGATTTGCGTGAAGTCTTTTCTCGTTATGGACCTTTGACTGGTGTCAATGTTGTTTATGACCAACGGACTGGACGATCAAGAGGATTTGCTTTCGTTTATTTTGAGAGAATTGATGATTCTAAAGAG
Seq A exon
GCAATGGAGCATGCAAACGGAATGGAGCTGGATGGCAGGAGGATTCGGGTGGATTACTCCATCACCAAGAGAGCGCATACACCCACCCCAGGCATATACATGGGCAGGCCGACGCA
Seq C2 exon
GAGACGATCCCCATCGCCTTACTATAGCAGGTACCGGTCACGATCAAGATCCCGTTCCTACAGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010973_MULTIEX1-7/8=6-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.641 C2=0.750
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(76.1=85.7)
A:
PF0007617=RRM_1=PD(21.1=38.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAATACGTGTCTTGGAGTGT
R:
TGGACTGTAGGAACGGGATCT
Band lengths:
245-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]