GgaEX1060134 @ galGal3
Exon Skipping
Gene
ENSGALG00000010973 | TRA2A
Description
NA
Coordinates
chr2:31210357-31218211:-
Coord C1 exon
chr2:31218023-31218211
Coord A exon
chr2:31210985-31211100
Coord C2 exon
chr2:31210357-31210464
Length
116 bp
Sequences
Splice sites
3' ss Seq
ATTCCTTCTCTTTCCCGCAGGCA
3' ss Score
13.27
5' ss Seq
GCAGTAAGG
5' ss Score
4.69
Exon sequences
Seq C1 exon
GCTAATCCAGATCCAAATACGTGTCTTGGAGTGTTTGGTCTCAGTTTATACACCACTGAGAGAGATTTGCGTGAAGTCTTTTCTCGTTATGGACCTTTGACTGGTGTCAATGTTGTTTATGACCAACGGACTGGACGATCAAGAGGATTTGCTTTCGTTTATTTTGAGAGAATTGATGATTCTAAAGAG
Seq A exon
GCAATGGAGCATGCAAACGGAATGGAGCTGGATGGCAGGAGGATTCGGGTGGATTACTCCATCACCAAGAGAGCGCATACACCCACCCCAGGCATATACATGGGCAGGCCGACGCA
Seq C2 exon
CAGTGGAGGAGGTGGTGGTGGTGGAGCAGGTCGGCGCCGCGACTCTTACTATGATAGGGGGTATGACAGAGGATATGACAGATACGAAGAATACGACTACAGATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010973-'11-14,'11-12,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.487 C2=0.405
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(76.1=85.7)
A:
PF0007617=RRM_1=PD(21.1=38.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGTCTTGGAGTGTTTGGT
R:
TCCTCTGTCATACCCCCTATCA
Band lengths:
244-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]