MmuEX6004312 @ mm9
Exon Skipping
Gene
ENSMUSG00000029817 | Tra2a
Description
transformer 2 alpha homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:1933972]
Coordinates
chr6:49195475-49199173:-
Coord C1 exon
chr6:49198985-49199173
Coord A exon
chr6:49196848-49196963
Coord C2 exon
chr6:49195475-49195609
Length
116 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTTTTTCTCTTGTAGGCT
3' ss Score
12.05
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
Exon sequences
Seq C1 exon
GCAAACCCAGATCCCAACACTTGCTTGGGAGTATTTGGCCTCAGTTTGTACACAACAGAGAGAGATCTTCGTGAAGTGTTTTCTCGATATGGACCTCTGAGTGGTGTTAATGTAGTTTATGATCAGCGAACTGGGAGGTCACGTGGATTTGCTTTTGTGTATTTTGAGAGAATAGATGACTCTAAGGAG
Seq A exon
GCTATGGAGAGAGCAAATGGGATGGAGCTGGACGGTAGAAGAATCCGTGTGGATTATTCTATCACCAAGAGAGCGCACACACCCACACCAGGCATTTACATGGGCAGACCAACTCA
Seq C2 exon
CAGCGGTGGTGGAGGTGGCGGAGGAGGAGGTGGCGGAGGAGGAGGTGGTGGCGGTGGTAGACGACGAGATTCTTACTACGATAGAGGATATGATCGAGGCTATGACAGATACGAAGATTATGATTACCGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029817-'9-9,'9-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=0.747 C2=0.705
Domain overlap (PFAM):
C1:
PF086487=DUF1777=PD(19.8=41.3),PF0007617=RRM_1=PU(76.1=85.7)
A:
PF0007617=RRM_1=PD(21.1=38.5)
C2:
PF0007617=RRM_1=PD(21.1=37.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCAGATCCCAACACTTGC
R:
GAATCTCGTCGTCTACCACCG
Band lengths:
258-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: