MmuEX6005995 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108434079-108438602:+
Coord C1 exon
chr6:108434079-108434093
Coord A exon
chr6:108435237-108435332
Coord C2 exon
chr6:108438480-108438602
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCTTGGTTCTCTCCGTTTAGAAC
3' ss Score
8.37
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TATTTAGAACTGAGA
Seq A exon
AACAATGCTTCGAAGCTGCTACTGGCCATCATGGAAAGCAGACACGATAGTGAAAATGCAGAGAGGATCCTGTACAACATGAGGCCCAAGGAGCTG
Seq C2 exon
GTGGAAGTGATCAAGAAGGCCTACATGCAAGGTGAAGTGGAATTTGAGGATGGGGAGAACGGTGAGGATGGAGCTGCCTCACCCAGGAACGTGGGCCACAACATCTACATCCTCGCTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'57-60,'57-58,59-60=AN
Average complexity
A_C2
Mappability confidence:
90%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.317
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: