DreEX6092767 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35575285-35575804:-
Coord C1 exon
chr11:35575694-35575804
Coord A exon
chr11:35575524-35575619
Coord C2 exon
chr11:35575285-35575419
Length
96 bp
Sequences
Splice sites
3' ss Seq
AATGACTATTTTCTATACAGAAT
3' ss Score
7.1
5' ss Seq
CTGGTACAT
5' ss Score
4.22
Exon sequences
Seq C1 exon
AACTGCATTGCCACACATGAATGTAACGGCATCGACATCATCATCGCCCTCATCCTCAATGACATCAACCCTCTCGGCAAGAAGAGAATGGACTTGGTGCTGGAGCTAAAG
Seq A exon
AATAATGCTTCAAAACTCCTGCTGGCCATCATGGAAAGCCGTCATGACAGTGAGAATGCAGAGAGGATTTTATACAACATGCGGCCTAAAGAACTG
Seq C2 exon
GTGGAGGTGATCAAGAAGGCCTACATGCAGGGAGAAATCGAGGTAGAGCACACTGATGACGGAGAGAACGGTGAAGAAGAGCATGCCGCTTCTCCTCGTAATGTGGGTCACAACATCTATATCCTGGCGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'54-53,'54-52,55-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.400
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PD(18.0=59.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGCATCGACATCATCATCG
R:
GGCATGCTCTTCTTCACCGTT
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]