RnoEX0045402 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140514135-140519748:+
Coord C1 exon
chr4:140514135-140514245
Coord A exon
chr4:140516562-140516657
Coord C2 exon
chr4:140519626-140519748
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCTTGGTTCTCTCCATTTAGAAC
3' ss Score
9.25
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AACTGCATCGCCACCCACGAGTCCAATGGCATCGATATCATCACAGCCCTCATCCTTAACGATATCAACCCTCTGGGGAAGAAACGGATGGACCTGGTGTTAGAACTGAAG
Seq A exon
AACAATGCTTCAAAGCTACTCCTGGCCATCATGGAAAGCAGACACGATAGTGAAAATGCAGAGAGGATCCTGTACAACATGAGGCCCAAGGAGCTG
Seq C2 exon
GTGGAAGTGATCAAGAAGGCCTACATGCAAGGCGAAGTGGAGTTTGAGGATGGGGAGAACGGTGAGGATGGAGCAGCCTCCCCCAGGAACGTGGGCCATAACATCTACATCCTCGCTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'78-82,'78-80,80-82
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.317
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PD(18.3=59.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGAGTCCAATGGCATCGAT
R:
TGCTCCATCCTCACCGTTCTC
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]