GgaEX6010805 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19146037-19148237:+
Coord C1 exon
chr12:19146037-19146147
Coord A exon
chr12:19147292-19147387
Coord C2 exon
chr12:19148115-19148237
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATGTTCTTCCTTCCCTTTAGAAC
3' ss Score
11.32
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AACTGTATTGCTACTCATGAGTCCAACGGTATTGACATCATCACAGCATTAATTCTCAATGATATCAACCCTTTGGGAAAGAAGAGGATGGACCTCGTGTTAGAACTGAAG
Seq A exon
AACAACGCTTCAAAGTTACTCTTGGCGATCATGGAGAGCAGGCACGACAGCGAGAACGCAGAAAGGATTCTCTACAACATGAGGCCCAAAGAGCTG
Seq C2 exon
GTGGAGGTGATAAAGAAGGCATATCTACAGGGCGAAGTAGAATTTGAGGACGGAGAGAATGGAGAAGATCTTGCAGCATCTCCTAGGAACGTGGGACACAACATTTATATATTAGCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'55-58,'55-57,56-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.195
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PD(18.3=59.5)
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTACTCATGAGTCCAACGG
R:
TCTCCATTCTCTCCGTCCTCA
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]