Special

GgaEX6010805 @ galGal4

Exon Skipping

Gene
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18501728-18503928:+
Coord C1 exon
chr12:18501728-18501838
Coord A exon
chr12:18502983-18503078
Coord C2 exon
chr12:18503806-18503928
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATGTTCTTCCTTCCCTTTAGAAC
3' ss Score
11.32
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AACTGTATTGCTACTCATGAGTCCAACGGTATTGACATCATCACAGCATTAATTCTCAATGATATCAACCCTTTGGGAAAGAAGAGGATGGACCTCGTGTTAGAACTGAAG
Seq A exon
AACAACGCTTCAAAGTTACTCTTGGCGATCATGGAGAGCAGGCACGACAGCGAGAACGCAGAAAGGATTCTCTACAACATGAGGCCCAAAGAGCTG
Seq C2 exon
GTGGAGGTGATAAAGAAGGCATATCTACAGGGCGAAGTAGAATTTGAGGACGGAGAGAATGGAGAAGATCTTGCAGCATCTCCTAGGAACGTGGGACACAACATTTATATATTAGCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'66-71,'66-70,67-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.062 C2=0.195
Domain overlap (PFAM):

C1:
PF084546=RIH_assoc=PD(18.3=59.5)
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTACTCATGAGTCCAACGG
R:
TCTCCATTCTCTCCGTCCTCA
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]