GgaEX6010805 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18501728-18503928:+
Coord C1 exon
chr12:18501728-18501838
Coord A exon
chr12:18502983-18503078
Coord C2 exon
chr12:18503806-18503928
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATGTTCTTCCTTCCCTTTAGAAC
3' ss Score
11.32
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AACTGTATTGCTACTCATGAGTCCAACGGTATTGACATCATCACAGCATTAATTCTCAATGATATCAACCCTTTGGGAAAGAAGAGGATGGACCTCGTGTTAGAACTGAAG
Seq A exon
AACAACGCTTCAAAGTTACTCTTGGCGATCATGGAGAGCAGGCACGACAGCGAGAACGCAGAAAGGATTCTCTACAACATGAGGCCCAAAGAGCTG
Seq C2 exon
GTGGAGGTGATAAAGAAGGCATATCTACAGGGCGAAGTAGAATTTGAGGACGGAGAGAATGGAGAAGATCTTGCAGCATCTCCTAGGAACGTGGGACACAACATTTATATATTAGCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'66-71,'66-70,67-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.195
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PD(18.3=59.5)
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTACTCATGAGTCCAACGG
R:
TCTCCATTCTCTCCGTCCTCA
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]