MmuEX6006001 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108366804-108373359:+
Coord C1 exon
chr6:108366804-108366952
Coord A exon
chr6:108367883-108367994
Coord C2 exon
chr6:108373327-108373359
Length
112 bp
Sequences
Splice sites
3' ss Seq
CCCCGTTTTCTCTTATTCAGGCT
3' ss Score
9.94
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GACATCGTGTCTGCCCTAGAGGACCGGCTCAGGCCCCTGGTGCAGGCTGAGCTGTCTGTGCTCGTGGATGTTCTACACAGACCAGAACTGCTCTTCCCCGAGAACACGGATGCCAGGAGGAAATGTGAGAGTGGAGGTTTCATCTGCAA
Seq A exon
GCTAATAAAACATACCAAGCAACTGCTGGAGGAGAATGAAGAGAAACTATGCATTAAAGTCTTACAGACCCTCAGGGAAATGATGACCAAAGACAGAGGCTATGGAGAGAAG
Seq C2 exon
CAAATTTCCATTGATGAATCGGAAAATGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'45-45,'45-44,46-45=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.162 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCGTGTCTGCCCTAGAGG
R:
GGCATTTTCCGATTCATCAATGGA
Band lengths:
178-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: