DreEX6092762 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35636928-35640701:-
Coord C1 exon
chr11:35640553-35640701
Coord A exon
chr11:35638723-35638834
Coord C2 exon
chr11:35636928-35636963
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTTTCATCTGTCTTTTTCAGATT
3' ss Score
13.23
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GATATCGTGTCTGCTCTGGAGGATCGTCTGCGGCCGCTGGTTCAGGCTGAGCTCTCTGTGTTGGTGGATGTTCTTCATCGGCCGGAGCTACTCTTCCCTGAGAACACAGATGCCCGAAGGAAATGCGAGAGTGGAGGCTTTATCTCAAA
Seq A exon
ATTAATAAAACATACTAAGCAGCTTTTAGAGGAAAATGAAGAGCGCTTGTGTATAAAAGTCCTGCAGACACTTCGAGAAATGATGACTAAAGACCGAGGCTATGGGGAAAAG
Seq C2 exon
CTAATTGCCTTTGATGATGAGCTGGATGTGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'41-40,'41-39,42-40=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.389
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGCTCTGGAGGATCGTC
R:
CTCAGCCACATCCAGCTCATC
Band lengths:
178-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]