RnoEX6014528 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140449399-140455879:+
Coord C1 exon
chr4:140449399-140449547
Coord A exon
chr4:140450442-140450553
Coord C2 exon
chr4:140455847-140455879
Length
112 bp
Sequences
Splice sites
3' ss Seq
CCCTGTTTTCTCTCACTCAGGCT
3' ss Score
9.66
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GACATCGTGTCTGCCCTGGAGGACCGACTCAGGCCCCTGGTCCAGGCCGAGCTGTCTGTGCTCGTGGATGTTCTACACAGACCGGAACTGCTTTTCCCTGAGAACACGGATGCCAGGAGGAAATGCGAAAGTGGAGGTTTCATCTGCAA
Seq A exon
GCTCATAAAACACACCAAGCAGCTGCTAGAGGAGAATGAAGAGAAACTGTGCATTAAAGTCTTACAGACCCTCAGGGAAATGATGACCAAAGATAGAGGCTATGGAGAAAAG
Seq C2 exon
CAAATTTCCATTGATGAATTGGAAAATGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'59-59,'59-56,60-59=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.144 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCGTGTCTGCCCTGGAG
R:
CGGCATTTTCCAATTCATCAATGGA
Band lengths:
180-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]