Special

GgaEX0027287 @ galGal3

Exon Skipping

Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19105800-19123509:+
Coord C1 exon
chr12:19105800-19105948
Coord A exon
chr12:19106858-19106969
Coord C2 exon
chr12:19123377-19123509
Length
112 bp
Sequences
Splice sites
3' ss Seq
AATTGATTGTTTATTTTCAGATT
3' ss Score
8.21
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GACATTGTATCAGCTTTAGAGGATCGTTTACGTCCTCTTGTCCAAGCAGAGTTGTCAGTACTGGTAGATGTGCTTCACAGACCCGAACTGCTCTTCCCGGAGAACACAGATGCAAGGAGGAAATGCGAAAGCGGGGGTTTCATTTGCAA
Seq A exon
ATTAATAAAGCATACTAAACAGCTGCTAGAGGAGAATGAAGAGAAACTATGTATTAAAGTATTACAGACACTCAGGGAAATGATGACCAAAGATAGAGGCTATGGAGAAAAG
Seq C2 exon
GGCGAGGCGCTCCGGCAAGTTTTGGTCAACCGTTACTATGGCAACGTCAGGCCTGCGGGACGGAGGGAGAGCCTCACCAGCTTCGGCAACGGGCCTCTGTCTGCTGGCAGCACCGGCAAGGCTGGGGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX1-12/17=11-16
Average complexity
S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.020 A=0.092 C2=0.467
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTAGAGGATCGTTTACGTCCT
R:
AGCAGACAGAGGCCCGTT
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]