BtaEX6093961 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21726642-21746778:-
Coord C1 exon
chr22:21746630-21746778
Coord A exon
chr22:21745608-21745719
Coord C2 exon
chr22:21726642-21726774
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGGTTTTCCCCTCCATTCAGGTT
3' ss Score
11.06
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GACATCGTCTCGGCCCTGGAGGACCGTCTCCGGCCCCTGGTGCAGGCCGAGTTATCTGTGCTGGTGGATGTCCTCCACCGGCCCGAGCTGCTCTTCCCGGAGAACACGGACGCCAGGAGGAAGTGTGAAAGCGGGGGCTTCATCTGCAA
Seq A exon
GTTAATCAAACACACTAAACAGCTGCTGGAGGAGAATGAGGAGAAACTCTGCATCAAGGTCCTTCAGACCCTCAGAGAAATGATGACCAAAGACAGAGGCTATGGAGAAAAG
Seq C2 exon
GGTGAGGCCCTCAGGCAGATTTTGGTCAACCGTTACTATGGAAACATCAGACCTTCGGGAAGAAGAGAGAGCCTCACGAGCTTTGGCAATGGCCCGCTGTCGCCAGGAGGACCCAGCAAGCCTGGGGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'41-45,'41-39,44-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=0.137 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGGCCGAGTTATCTGTG
R:
CTCCTCCCCCAGGCTTGC
Band lengths:
243-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]