GgaEX0027287 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18462164-18496160:+
Coord C1 exon
chr12:18462164-18462312
Coord A exon
chr12:18463222-18463333
Coord C2 exon
chr12:18495907-18496160
Length
112 bp
Sequences
Splice sites
3' ss Seq
AATTGATTGTTTATTTTCAGATT
3' ss Score
8.21
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GACATTGTATCAGCTTTAGAGGATCGTTTACGTCCTCTTGTCCAAGCAGAGTTGTCAGTACTGGTAGATGTGCTTCACAGACCCGAACTGCTCTTCCCGGAGAACACAGATGCAAGGAGGAAATGCGAAAGCGGGGGTTTCATTTGCAA
Seq A exon
ATTAATAAAGCATACTAAACAGCTGCTAGAGGAGAATGAAGAGAAACTATGTATTAAAGTATTACAGACACTCAGGGAAATGATGACCAAAGATAGAGGCTATGGAGAAAAG
Seq C2 exon
TGAGGGAGCCCATGACCCAAATTACAGAGGAAGTCCGGGATCAGTTACTGGAGGCCTCTGCAGCTACAAGAAAGGCGTACAGCACCTACCGGAGGGAAGCTGATTCTGATGACCATTATTCAGCGGCAGAAGGCGCACAGTCAGCAGCAGACAAGAGCAAAGATGACCTGGAGATGAGTGCTGTGATCTCCATAATGCAACCCATCCTCCGCTTCTTGCAGCTGCTCTGTGAAAACCACAACCGGGATTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX3-16/24=15-24
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.086 C2=0.247
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF084546=RIH_assoc=PU(24.2=34.1)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCGGAGAACACAGATGC
R:
TCACAGCACTCATCTCCAGGT
Band lengths:
243-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]