Special

GgaEX0027287 @ galGal4

Exon Skipping

Gene
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18462164-18496160:+
Coord C1 exon
chr12:18462164-18462312
Coord A exon
chr12:18463222-18463333
Coord C2 exon
chr12:18495907-18496160
Length
112 bp
Sequences
Splice sites
3' ss Seq
AATTGATTGTTTATTTTCAGATT
3' ss Score
8.21
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GACATTGTATCAGCTTTAGAGGATCGTTTACGTCCTCTTGTCCAAGCAGAGTTGTCAGTACTGGTAGATGTGCTTCACAGACCCGAACTGCTCTTCCCGGAGAACACAGATGCAAGGAGGAAATGCGAAAGCGGGGGTTTCATTTGCAA
Seq A exon
ATTAATAAAGCATACTAAACAGCTGCTAGAGGAGAATGAAGAGAAACTATGTATTAAAGTATTACAGACACTCAGGGAAATGATGACCAAAGATAGAGGCTATGGAGAAAAG
Seq C2 exon
TGAGGGAGCCCATGACCCAAATTACAGAGGAAGTCCGGGATCAGTTACTGGAGGCCTCTGCAGCTACAAGAAAGGCGTACAGCACCTACCGGAGGGAAGCTGATTCTGATGACCATTATTCAGCGGCAGAAGGCGCACAGTCAGCAGCAGACAAGAGCAAAGATGACCTGGAGATGAGTGCTGTGATCTCCATAATGCAACCCATCCTCCGCTTCTTGCAGCTGCTCTGTGAAAACCACAACCGGGATTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX3-16/24=15-24
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.020 A=0.086 C2=0.247
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
PF084546=RIH_assoc=PU(24.2=34.1)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCGGAGAACACAGATGC
R:
TCACAGCACTCATCTCCAGGT
Band lengths:
243-355
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]