MmuEX6006009 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108343899-108344894:+
Coord C1 exon
chr6:108343899-108344064
Coord A exon
chr6:108344229-108344399
Coord C2 exon
chr6:108344829-108344894
Length
171 bp
Sequences
Splice sites
3' ss Seq
AACATATTATGTTCATTAAGGTT
3' ss Score
5.92
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
TGAGGAGAACACACCTTTGGACCTGGATGACCATGGTGGCAGAACCTTCCTCAGGGTCCTGCTCCACTTGACAATGCATGACTACCCACCCCTGGTGTCTGGGGCCCTGCAGCTCCTCTTTCGGCACTTCAGCCAGAGGCAGGAGGTCCTTCAGGCCTTCAAACAG
Seq A exon
GTTCAACTGCTGGTTACTAGCCAAGATGTGGACAACTACAAACAGATCAAGCAAGACTTGGACCAACTAAGGTCCATTGTGGAGAAGTCTGAGCTCTGGGTGTACAAAGGCCAAGGTCCCGATGAGCCTATGGACGGAGCCTCCGGTGAAAATGAGCATAAGAAAACCGAG
Seq C2 exon
GAGGGGACGAGCAAGCCACTGAAGCACGAGAGCACCAGCAGCTACAACTACCGAGTGGTGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'33-33,'33-31,34-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=0.351 C2=0.409
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0136516=RYDR_ITPR=PU(1.7=13.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGAACACACCTTTGGACC
R:
TCACCACTCGGTAGTTGTAGCT
Band lengths:
226-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: