GgaEX1030867 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19092510-19094131:+
Coord C1 exon
chr12:19092510-19092675
Coord A exon
chr12:19092783-19092953
Coord C2 exon
chr12:19094066-19094131
Length
171 bp
Sequences
Splice sites
3' ss Seq
ATGGGTTGCATTTATGTAAGGTT
3' ss Score
2.42
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TGAGGAGAACACTCCGTTGGATCTGGATGATCATGGTGGCAGAACATTCCTCAGAGTTCTGCTGCATTTAACGATGCATGATTACCCTCCCCTGGTCTCCGGAGCACTCCAGCTTCTCTTCCGGCACTTCAGTCAAAGACAGGAAGTTCTTCAGGCTTTTAAGCAG
Seq A exon
GTTCAACTGCTTGTTACCAGCCAAGATGTTGACAACTACAAGCAGATAAAACAAGATTTGGACCAGCTGAGATCTATTGTGGAAAAATCCGAGCTTTGGGTATACAAAGGCCAGGGTCCTGATGAGACCATGGATGGAGTGCCAGGTGAAAACGAACACAAGAAGAAAGAG
Seq C2 exon
GAAGGTCACAGCAAGTCACAGAAGCCTGAAAGTACGAGCAGCTACAACTACCGCGTAGTGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'28-32,'28-31,29-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.326 C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0136516=RYDR_ITPR=PU(1.7=13.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACACTCCGTTGGATCTGGA
R:
TCTTTCACTACGCGGTAGTTGT
Band lengths:
226-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]