BtaEX6093951 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21779097-21780289:-
Coord C1 exon
chr22:21780128-21780289
Coord A exon
chr22:21779844-21780014
Coord C2 exon
chr22:21779097-21779162
Length
171 bp
Sequences
Splice sites
3' ss Seq
GGTCAATTGCATTCGTTCAGGTT
3' ss Score
4.24
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GAGAACACCCCGCTGGACCTGGATGACCACGGCGGCAGAACTTTCCTCCGAGTCCTGCTCCACTTGACGATGCACGACTACCCACCCCTGGTGTCGGGGGCCCTGCAGCTCCTCTTTCGGCACTTCAGTCAGAGACAGGAGGTCCTCCAGGCCTTCAAACAG
Seq A exon
GTTCAGCTGCTCGTTACCAGCCAAGATGTCGATAACTACAAGCAGATAAAACAAGACCTGGACCAGCTGAGATCCATCGTGGAGAAGTCAGAGCTCTGGGTGTACAAAGGGCAGGGCCCCGACGAGGCCATGGACGGCGCATCTGGAGAAAACGAGCATAAGAAGACAGAG
Seq C2 exon
GAGGGGAATAACAAGTCACAGCAGCATGAGAGCACCAGCAGCTACAACTACAGGGTGGTCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'28-27,'28-26,29-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.263 C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0136516=RYDR_ITPR=PU(1.7=13.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACACCCCGCTGGACC
R:
TCTTTGACCACCCTGTAGTTGT
Band lengths:
227-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]