GgaEX1030867 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18445189-18456712:+
Coord C1 exon
chr12:18445189-18445376
Coord A exon
chr12:18449147-18449317
Coord C2 exon
chr12:18456584-18456712
Length
171 bp
Sequences
Splice sites
3' ss Seq
ATGGGTTGCATTTATGTAAGGTT
3' ss Score
2.42
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGAGCAATGTGATGAGATCAATCCATGGAGTCGGGGAGCTGATGACCCAGGTGGTGCTGAGAGGTGGGGGGTTCTTGCCCATGACCCCGCTTGCTGCTGCTCCTGAGGGCAATGTCAAGCAGACTGAGCCGGAGAAGGAGGACATCCTGGTGATGGATACGAAGCTGAAGATCATTGAAATACTTCAG
Seq A exon
GTTCAACTGCTTGTTACCAGCCAAGATGTTGACAACTACAAGCAGATAAAACAAGATTTGGACCAGCTGAGATCTATTGTGGAAAAATCCGAGCTTTGGGTATACAAAGGCCAGGGTCCTGATGAGACCATGGATGGAGTGCCAGGTGAAAACGAACACAAGAAGAAAGAG
Seq C2 exon
GCTTGCAACAACACCAGCGACAGAAAGCATGCTGACTCCATATTGGAGAAGTACGTTACAGAAATAGTGATGAGTATCGTCACCACTTTCTTCAGTTCCCCATTCTCTGATCAGAGCACTACTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX3-4/24=C1-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCTGATGACCCAGGT
R:
TGGGGAACTGAAGAAAGTGGTG
Band lengths:
257-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]