DreEX0040325 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35668359-35670377:-
Coord C1 exon
chr11:35670212-35670377
Coord A exon
chr11:35669476-35669649
Coord C2 exon
chr11:35668359-35668427
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCCCCCCCCCCCCCATGCAGGTT
3' ss Score
11.79
5' ss Seq
AAGGTGCTA
5' ss Score
2.48
Exon sequences
Seq C1 exon
TGAGGAGAACACACCTCTGGATCTTGATGACCACGGTGGCAGAACGTTTCTGAGGGTTTTGCTTCATCTCACCATGCATGACTATCCACCGCTTGTGTCCGGAGCGCTTCACCTGCTCTTTAGACACTTCAGCCAGAGACAAGAAGTGCTCATGGCTTTCAAACAG
Seq A exon
GTTCAGCTTTTAGTGACCAGTCAAGACGTCGACAATTACAAGCAGATCAAATCAGACCTTGACCAGCTGCGATCCAACGTGGAGAAATCTGAGCTCTGGGTTTATAAGCGTCAGGGTGATGAAGGCATGGATGGAGGAGACGGACTTCCTGCAGAGTCTGACCACAAGAAGAAG
Seq C2 exon
AGGGACTCTGGCTCAGACAAAAAAAAGACGGACGGAAATGGCAGTGACAATTACAGAGACGTAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'29-28,'29-27,30-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.328 C2=0.652
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0136516=RYDR_ITPR=PU(1.7=13.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAGAACACACCTCTGGA
R:
TCTTTTACGTCTCTGTAATTGTCACT
Band lengths:
234-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]