RnoEX6014534 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140427266-140428314:+
Coord C1 exon
chr4:140427266-140427431
Coord A exon
chr4:140427653-140427823
Coord C2 exon
chr4:140428249-140428314
Length
171 bp
Sequences
Splice sites
3' ss Seq
AACATATTGTGTTCATTAAGGTT
3' ss Score
6.89
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
TGAGGAGAACACACCTCTGGACTTGGATGATCATGGTGGCAGAACCTTCCTCAGGGTCCTGCTCCACTTGACAATGCATGATTACCCACCCCTGGTGTCTGGGGCCCTGCAGCTCCTCTTCCGGCATTTCAGCCAGAGGCAGGAGGTCCTTCAGGCCTTCAAACAG
Seq A exon
GTTCAACTGCTGGTTACTAGCCAAGATGTGGACAACTACAAACAGATCAAGCAAGACTTGGACCAGCTAAGATCCATCGTGGAGAAGTCTGAGCTCTGGGTATACAAAGGCCAGGGTCCCGATGAGCCTATGGACGGAGCCTCTGGTGAAAACGAACATAAGAAAACTGAG
Seq C2 exon
GAGGGGACCAGTAAGCCACTGAAGCACGAAAGCACCAGCAGCTACAACTACCGAGTGGTGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'45-44,'45-43,46-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=0.351 C2=0.409
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0136516=RYDR_ITPR=PU(1.7=13.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAGAACACACCTCTGGA
R:
TCACCACTCGGTAGTTGTAGCT
Band lengths:
227-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]