MmuEX6006019 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108330910-108332218:+
Coord C1 exon
chr6:108330910-108331068
Coord A exon
chr6:108331182-108331354
Coord C2 exon
chr6:108332099-108332218
Length
173 bp
Sequences
Splice sites
3' ss Seq
TGCGTTTCTTTCCCTAAAAGGAG
3' ss Score
7.5
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATCTTCAAGCTGTTGCAGGCCCCCTTCACGGACTGCGGGGATGGCCCGATGCTTCGGCTGGAGGAGCTGGGGGATCAGCGCCATGCTCCTTTCAGACATATTTGCCGACTCTGCTACAGGGTCCTGCGACACTCACAGCAAGACTACAGGAAGAACCAG
Seq A exon
GAGTACATAGCCAAGCAGTTTGGCTTCATGCAGAAGCAGATTGGCTATGACGTGCTGGCCGAAGACACCATCACTGCCCTGCTCCACAACAACCGGAAACTCCTGGAGAAGCACATCACCGCGGCAGAGATTGACACGTTTGTCAGCCTGGTGCGAAAGAACAGGGAGCCCAG
Seq C2 exon
GTTCTTGGATTACCTCTCTGACCTCTGCGTATCCATGAACAAGTCAATCCCTGTGACACAGGAGCTCATCTGTAAAGCTGTGCTCAATCCCACCAATGCTGACATCCTGATTGAGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'20-20,'20-19,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(25.2=100)
A:
PF0136516=RYDR_ITPR=FE(27.7=100)
C2:
PF0136516=RYDR_ITPR=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTCAAGCTGTTGCAGGCC
R:
GGTGGGATTGAGCACAGCTTT
Band lengths:
253-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: