GgaEX6010809 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18437798-18439032:+
Coord C1 exon
chr12:18437798-18437956
Coord A exon
chr12:18438483-18438655
Coord C2 exon
chr12:18438913-18439032
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCCCTTTGGTTAAAGGAA
3' ss Score
6.74
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATTTTCAAGTTGTTGCAAGCACCATTTACAGACAGCGGCGATGGCCCCATGCTGCGGTTGGAGGAGCTCGGAGACCAACGTCACGCTCCATTCAGACACATATGCCGGCTCTGCTACAGGGTGCTGAGGCATTCTCAGCAGGATTACAGGAAGAATCAG
Seq A exon
GAATACATTGCAAAGCAATTTGGCTTCATGCAGAAACAAATTGGCTATGATGTCTTGGCTGAGGACACTATTACAGCACTGCTTCACAACAATCGCAAGCTCCTGGAGAAACACATCACGGCTGCTGAGATTGATACCTTTGTTAGTCTTGTGAGGAAGAATAGGGAGCCCAG
Seq C2 exon
GTTTTTGGATTATCTCTCAGATCTGTGCGTTTCCATGAACAAGTCTATTCCAGTAACACAGGAGTTGATTTGTAAAGCCGTACTGAATCCAGCAAATGCAGACATACTCATTGAAACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'20-26,'20-25,21-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(25.2=100)
A:
PF0136516=RYDR_ITPR=FE(27.7=100)
C2:
PF0136516=RYDR_ITPR=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACCATTTACAGACAGCGG
R:
TGTCTGCATTTGCTGGATTCAGT
Band lengths:
246-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]