RnoEX0045387 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140413507-140415980:+
Coord C1 exon
chr4:140413507-140413665
Coord A exon
chr4:140414430-140414602
Coord C2 exon
chr4:140415861-140415980
Length
173 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTCTTTCCCTAAAAGGAG
3' ss Score
8.04
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATCTTCAAGCTTTTGCAGGCCCCCTTCACGGACTGCGGGGATGGCCCAATGCTTCGGCTGGAGGAGCTGGGGGACCAGCGGCACGCTCCTTTCAGACACATTTGCCGACTCTGCTACAGGGTCCTGAGACACTCACAGCAAGACTACAGGAAGAACCAG
Seq A exon
GAGTACATAGCCAAGCAGTTTGGCTTCATGCAGAAGCAGATTGGCTATGATGTGCTGGCCGAAGACACCATCACTGCCCTGCTCCACAACAACCGAAAGCTCCTGGAAAAGCACATCACCGCAGCAGAGATTGACACGTTTGTCAGCCTGGTGCGAAAGAACAGGGAGCCCAG
Seq C2 exon
GTTCTTGGATTACCTCTCTGACCTCTGTGTATCCATGAATAAGTCAATCCCTGTGACCCAGGAGCTCATTTGTAAAGCTGTGCTGAATCCCACCAATGCTGACATCCTGATTGAGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'32-29,'32-27,33-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(25.2=100)
A:
PF0136516=RYDR_ITPR=FE(27.7=100)
C2:
PF0136516=RYDR_ITPR=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTGCAGGCCCCCTTCAC
R:
TCAGCATTGGTGGGATTCAGC
Band lengths:
252-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]