BtaEX6093943 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21794871-21799223:-
Coord C1 exon
chr22:21799065-21799223
Coord A exon
chr22:21796260-21796432
Coord C2 exon
chr22:21794871-21794990
Length
173 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCCTCCCTTTGAAGGAG
3' ss Score
10.04
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATCTTCAAGCTATTACAGGCCCCATTCACAGACTGTGGTGACGGCCCAATGCTGCGTCTGGAGGAGCTGGGAGACCAGCGGCACGCACCCTTCCGACACATCTGCCGCCTTTGCTACCGGGTCCTGAGACATTCCCAGCAGGACTACAGGAAGAACCAG
Seq A exon
GAGTACATAGCCAAGCAGTTCGGCTTCATGCAGAAGCAGATTGGCTATGACGTGCTGGCCGAAGACACTATCACCGCCCTTCTGCACAATAATCGCAAACTCCTGGAAAAACACATCACCGCGGCAGAGATTGACACCTTCGTCAGCCTGGTGCGGAAGAACAGGGAGCCCAG
Seq C2 exon
ATTCTTAGATTACCTCTCTGACCTCTGCGTGTCCATGAACAAATCCATTCCGGTGACTCAGGAACTGATATGTAAAGCCGTGCTGAATCCAACCAATGCCGACATCCTCATTGAGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(25.2=100)
A:
PF0136516=RYDR_ITPR=FE(27.7=100)
C2:
PF0136516=RYDR_ITPR=FE(19.4=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGGCCCCATTCACAGACT
R:
GGATGTCGGCATTGGTTGGAT
Band lengths:
253-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]