GgaEX6010809 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19081434-19082668:+
Coord C1 exon
chr12:19081434-19081592
Coord A exon
chr12:19082119-19082291
Coord C2 exon
chr12:19082549-19082668
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCCCTTTGGTTAAAGGAA
3' ss Score
6.74
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATTTTCAAGTTGTTGCAAGCACCATTTACAGACAGCGGCGATGGCCCCATGCTGCGGTTGGAGGAGCTCGGAGACCAACGTCACGCTCCATTCAGACACATATGCCGGCTCTGCTACAGGGTGCTGAGGCATTCTCAGCAGGATTACAGGAAGAATCAG
Seq A exon
GAATACATTGCAAAGCAATTTGGCTTCATGCAGAAACAAATTGGCTATGATGTCTTGGCTGAGGACACTATTACAGCACTGCTTCACAACAATCGCAAGCTCCTGGAGAAACACATCACGGCTGCTGAGATTGATACCTTTGTTAGTCTTGTGAGGAAGAATAGGGAGCCCAG
Seq C2 exon
GTTTTTGGATTATCTCTCAGATCTGTGCGTTTCCATGAACAAGTCTATTCCAGTAACACAGGAGTTGATTTGTAAAGCCGTACTGAATCCAGCAAATGCAGACATACTCATTGAAACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(25.2=100)
A:
PF0136516=RYDR_ITPR=FE(27.7=100)
C2:
PF0136516=RYDR_ITPR=FE(19.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACCATTTACAGACAGCGG
R:
TGTCTGCATTTGCTGGATTCAGT
Band lengths:
246-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]