DreEX6092745 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35678105-35681417:-
Coord C1 exon
chr11:35681259-35681417
Coord A exon
chr11:35678356-35678528
Coord C2 exon
chr11:35678105-35678224
Length
173 bp
Sequences
Splice sites
3' ss Seq
TGTTATGTCTTTGTGTCCAGGAA
3' ss Score
9.59
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
ATCTTCAAGCTGCTACAGGCTCCATTCACAGACAGCGGGGACGGTCCGATGCTGCGTCTGGAGGAGCTGAATGACCAGAGACACGCTCCCTTCAGGCACATCTGCCGGCTCTGCTACCGCGTCCTGCGACACTCACAGCAGGACTACAGGAAGAACCAG
Seq A exon
GAATACATTGCCAAGCAGTTCCGCTTCATGCAGAAACAGATCGGCTACGATGTGTTGGCCGAGGACACAATAACAGCCCTCCTCCACAACAACCGCAAACTCTTGGAGAAGCACATCACGGCGGCAGAAATCGACACGTTTGTCAGCCTTGTGAGGAAAAACCGTGAACCGAG
Seq C2 exon
GTTTCTGGACTACCTCTCAGATCTGTGTGTGTCTATGAATAAGTCCATCCCAGTGACTCAGGAACTGATCTGCAATGCCGTTTTAAACCCCGCCAACGCTGACATCCTTATAGAGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(25.2=100)
A:
PF0136516=RYDR_ITPR=FE(27.7=100)
C2:
PF0136516=RYDR_ITPR=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAAGCTGCTACAGGCTCC
R:
CGGGGTTTAAAACGGCATTGC
Band lengths:
249-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]