MmuEX6006559 @ mm10
Exon Skipping
Gene
ENSMUSG00000041460 | Cacna2d4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:MGI Symbol;Acc:MGI:2442632]
Coordinates
chr6:119271873-119277139:+
Coord C1 exon
chr6:119271873-119271951
Coord A exon
chr6:119274225-119274358
Coord C2 exon
chr6:119277062-119277139
Length
134 bp
Sequences
Splice sites
3' ss Seq
CAGAGCCTTGTCCTCTCCAGGCT
3' ss Score
6.32
5' ss Seq
CGGGTGCGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
GTCCGAGTTTTCACTTACCTTATTGGAAGAGAAGTGACTTTCGCTGACCGCATGAAGTGGATCGCCTGCAACAATAAAG
Seq A exon
GCTACTACACACAGATCTCCACACTGGCGGATGCGCAGGAGAGCGTGATGGAGTACCTGCATGTGCTTAGCCGCCCCATGGTCATCAACCATGACCACGACATCATCTGGACAGAGGCTTACATGGACAGCCGG
Seq C2 exon
CTCTTCACATCAGAGGCACAGAGCCTGATGCTCCTCACCACAGTGGCCATGCCTGTCTTCAGCAAAAAGAATGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041460-'18-36,'18-27,19-36=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137681=VWA_3=FE(15.7=100)
A:
PF137681=VWA_3=PD(2.4=8.9),PF0274313=Cache_1=PU(12.1=17.8)
C2:
PF0274313=Cache_1=FE(26.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGAGTTTTCACTTACCTTATTGG
R:
TTCATTCTTTTTGCTGAAGACAGGC
Band lengths:
154-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types