RnoEX6014845 @ rn6
Exon Skipping
Gene
ENSRNOG00000008031 | Cacna2d4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:RGD Symbol;Acc:1562038]
Coordinates
chr4:151331501-151336297:+
Coord C1 exon
chr4:151331501-151331579
Coord A exon
chr4:151333540-151333673
Coord C2 exon
chr4:151336220-151336297
Length
134 bp
Sequences
Splice sites
3' ss Seq
GACAGCCTTGTCCTCTCCAGGTT
3' ss Score
8.9
5' ss Seq
CGGGTGCGT
5' ss Score
7.91
Exon sequences
Seq C1 exon
GTCCGAGTTTTCACCTACCTTATTGGAAGAGAAGTGACTTTCGCTGACCGCATGAAATGGATCGCCTGCAACAATAAAG
Seq A exon
GTTACTACACACAGATCTCCACGCTGGCTGATGCGCAGGAGAACGTGATGGAGTACCTGCACGTGCTCAGCCGTCCCATGGTCATCAACCACGACCACGACATCATCTGGACAGAGGCTTATATGGACAGCCGG
Seq C2 exon
CTCCTTACCTCAGAGGCACAAAGCCTGATGCTCCTCACCACAGTGGCCATGCCAGTCTTCAGCAAAAAGAACGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008031-'14-18,'14-16,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=FE(14.4=100)
A:
PF135191=VWA_2=PD(10.6=42.2),PF0274313=Cache_1=PU(8.5=17.8)
C2:
PF0274313=Cache_1=FE(26.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGAGTTTTCACCTACCTT
R:
TTCGTTCTTTTTGCTGAAGACTGG
Band lengths:
154-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]