Special

BtaEX6024835 @ bosTau6

Exon Skipping

Gene
ENSBTAG00000021994 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr5:108781966-108784828:-
Coord C1 exon
chr5:108784750-108784828
Coord A exon
chr5:108783069-108783202
Coord C2 exon
chr5:108781966-108782043
Length
134 bp
Sequences
Splice sites
3' ss Seq
GCCACCCTCTCCCCCACCAGGCT
3' ss Score
9.08
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GTCCGGGTCTTCACCTACCTGATTGGGAGGGAAGTGAGTTTTGCTGACCGCTTGAAGTGGATCGCCTGCAACAACAAAG
Seq A exon
GCTACTACACGCAGATCTCCACACTGGCGGATGCCCAGGAGAACGTGATGGAATACCTGCATGTGCTCAGCCGGCCCATGGTCATCAACCACGACCACGACATCACCTGGACCGAAGCCTACATAGATAGCAAG
Seq C2 exon
GTTCTCCACCCGCAGGCACAGAGCCTGGCGCTGCTGACCACCGTGGCCATGCCTGTCTTCAGCAAGAAGAATGAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021994-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF137681=VWA_3=FE(15.7=100)
A:
PF137681=VWA_3=PD(2.4=8.9),PF0274313=Cache_1=PU(8.5=17.8)
C2:
PF0274313=Cache_1=FE(26.6=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGGGTCTTCACCTACCTG
R:
TCTTGCTGAAGACAGGCATGG
Band lengths:
146-280
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]