Special

MmuEX6013542 @ mm9

Exon Skipping

Gene
ENSMUSG00000030954 | Gp2
Description
glycoprotein 2 (zymogen granule membrane) [Source:MGI Symbol;Acc:MGI:1914383]
Coordinates
chr7:126593574-126595858:-
Coord C1 exon
chr7:126595647-126595858
Coord A exon
chr7:126595014-126595162
Coord C2 exon
chr7:126593574-126593819
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTTTTTGTTTTGTGCCAAAGAAA
3' ss Score
3.95
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
ACTCTCAGAGTTTGCAGCCTCTTCTGGACTGTGGAGATAATGAGATCAAGGTGAAGTTGGACAAGTGTTTGCTGGGAGGTATGGGTTTCAAGGAGGAGATCATTGCCTACCTCAATGACCGGAACTGCAATGGTACCATGCAAGATGAGCCCAACAACTGGGTGTCCATGACCAGCCCTGTTGTGGCTAATTACTGTGGGAACATCCTGGAG
Seq A exon
AAAAATGGGACCCATGCCATCTACAGAAACACCCTTTCCTTGGCCACTGACTTTATTATCAGGGACTTTCGTGTCAATGTCAACTTCCAGTGTGCCTACCCACTGGACATGAGCGTCAGCCTCGAAACTGCTCTCCAGCCCATTGTAAG
Seq C2 exon
CTCCCTGACTGTTGATGTGGACGGAGCAGGAGAGTTCAATGTCAAGATGGCCCTCTTCCAAGACCAGAGCTACACAAACCCTTATGAAGGAGCCGAAGTGTTGCTTCCAGTGGAGTCTATACTCTATGTGGGTGTCCTCTTAAATAGAGGGGATACCTCCAGGTTCAAACTGTTGCTGACCAACTGCTATGCCACCCCTTCAGAAGACAGGCATGACCCTGTGAAGTACTTCATCATCAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030954-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.014 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0010018=Zona_pellucida=PU(24.1=85.9)

							
A:
PF0010018=Zona_pellucida=FE(19.4=100)

							
C2:
PF0010018=Zona_pellucida=FE(32.4=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000078821





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000033255
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr16:20319620-20319768 
ALTERNATIVE
HsaEX0028072
(GP2)
Human
(hg19)
chr16:20331034-20331090 
ALTERNATIVE
HsaEX0028072
(GP2)
Rat
(rn6)
chr1:189175524-189175672 
HIGH PSI
RnoEX6004573
(Gp2)
Cow
(bosTau6)
chr25:18112438-18112586 
HIGH PSI
BtaEX6108923
(GP2)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GTGTTTGCTGGGAGGTATGGG

				
R: 
AAGCAACACTTCGGCTCCTTC

				
Band lengths: 
254-403

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










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