RnoEX6004573 @ rn6
Exon Skipping
Gene
ENSRNOG00000015716 | Gp2
Description
glycoprotein 2 [Source:RGD Symbol;Acc:621695]
Coordinates
chr1:189174125-189176363:-
Coord C1 exon
chr1:189176152-189176363
Coord A exon
chr1:189175524-189175672
Coord C2 exon
chr1:189174125-189174370
Length
149 bp
Sequences
Splice sites
3' ss Seq
GGTTTTGTTTTGTGCCAAAGAAC
3' ss Score
2.88
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
ACCCTCAGAGTTTGCAGCCTCTTCTGGACTGTGGGGCTAATGAGATCAAGGTGAAGCTGGACAAGTGTTTGCTGGGAGGTCTGGGTTTCAAGGAGGACATCATCACCTACCTGAATGACCGGAACTGCAGAGGTACCATGAAAGATGAGCCCAACAACTGGGTGTCCACGACCAGCCCTGTTGTGGCTAATGACTGTGGGAACATCCTGGAG
Seq A exon
AACAATGGGACCCATGCCATCTATAGAAACACCCTCTCCTTGGCCACTGATTTCATTATCAGGGACTTCCTTGTCAACGTCAACTTCCAGTGTGCCTACCCTCTGGACATGAATGTCAGTCTCCAAACTGCACTCCAGCCCATCGTAAG
Seq C2 exon
TTCCCTGAATGTTGATGTGGGTGGAGCAGGAGAGTTCACTGTTACGATGGCACTCTTCCAAGACCAAAGCTACACACACCCTTATGAAGGAAGCAAAGTGTTGCTTCCAGTGGAGAATATACTCTACGTGGGCGTCCTCTTGAATAGGGGTGATACCTCCAGGTTCAAACTGTTGCTGACCAACTGCTATGCCACCCCTTCAGGAGACAGGAATGACATTGTGAAGTACTTCATCATCAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015716-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(24.1=85.9)
A:
PF0010018=Zona_pellucida=FE(19.4=100)
C2:
PF0010018=Zona_pellucida=FE(32.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGTTGTGGCTAATGACT
R:
TCTCCTGAAGGGGTGGCATAG
Band lengths:
245-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]