GgaEX6025642 @ galGal4
Exon Skipping
Gene
ENSGALG00000006614 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr24:3532778-3533810:-
Coord C1 exon
chr24:3533608-3533810
Coord A exon
chr24:3533133-3533296
Coord C2 exon
chr24:3532778-3533026
Length
164 bp
Sequences
Splice sites
3' ss Seq
TCATGTTCTGCCTTCTGCAGTCC
3' ss Score
8.75
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
CCACCCATGACATCATTGATGCAGAGGTGACGTGCAAAGCTGCCCAAATGGAGGTGTCCATCTCCAAGTGCAAGCTGTTCCAGCTGGGCTTCGAGCGCGAGGGCGTGCGGGTCAATGACCGCCACTGTCCCGGCATAGAGGGCGAGGACTTCATCTCCTTCCAGATCAACAACACCAAGGGCAATTGTGGCAACCTGGTGCAG
Seq A exon
TCCAACAGCACTCACATCGTATACAAGAACACGGTGTGGATTGAAAGCGCAAACAACACAGGCAATATCATCACCCGGGACCGGACCATCAACGTGGAGTTTTCCTGTGCCTATGAGCTGGACATCAAGATCTCTCTGGACTCAGTCGTGCGGCCAATGCTCAG
Seq C2 exon
TGTGATCAACCTGACAGTGCCAACGCAGGAAGGGAGCTTCACGACCAAGATGGCCCTATACAAGAACTCCTCCTACAAGCACCCGTACCGGCAGGGGGAGGTGGTGCTGACCACACGGGATGTGCTCTATGTGGGGGTCTTTGTGGTGGGGGCTGACTCCAACCACCTGATCCTGATGCTGAACAAGTGCTATGCAACGCCCTCGCGGGACAGCAATGACAAACTACGCTACTTCATCATTGAGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614-'19-21,'19-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(22.4=83.8)
A:
PF0010018=Zona_pellucida=FE(21.2=100)
C2:
PF0010018=Zona_pellucida=FE(32.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGGCGAGGACTTCATCTC
R:
GCATCAGGATCAGGTGGTTGG
Band lengths:
246-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]