BtaEX6058742 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004456 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr15:32333352-32336047:+
Coord C1 exon
chr15:32333352-32333554
Coord A exon
chr15:32334716-32334879
Coord C2 exon
chr15:32335799-32336047
Length
164 bp
Sequences
Splice sites
3' ss Seq
GACCTTCCTTTGCTCTGCAGTCC
3' ss Score
8.62
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
ACTCCCACGACATCATTGATGCAGAGGTGACCTGCAAGGCGGCTCAGATGGAAGTGTCCATATCTAAGTGCAAGCTCTTCCAGCTCGGCTTCGAGAGGGAGGGCGTGCGGGTCAATGACAGGCAGTGCACCGGCATTGAGGGCGAGGACTTTATCTCCTTTCAGATCAACAACACCAAAGGGAACTGTGGAAACATTGTGCAG
Seq A exon
TCCAATGGCACTCATATCATGTATAAAAACACTATTTGGATCGAAAGTGCCAACAATACTGGCAACATCATCACCAGGGACAGGACGATCAATGTGGAATTTTCATGTGCTTATGAGCTCGATATCAAGATCTCCTTGGACTCTGTTGTGAAGCCTATGCTAAG
Seq C2 exon
TGTCATTAACCTGACGGTTCCAACTCAAGAAGGCAGCTTCACCACCAAGATGGCACTCTACAAAAACGCCTCCTACAAACATCCTTACCGCCAGGGTGAAGTTGTACTGACAACTCGAGATGTGCTGTACGTTGGGGTCTTTGTGGTTGGAGCTGACTCCACACATCTCATTCTGACATTGAACAAATGTTACGCCACCCCATCCCGTGACAGCAACGACAAGCTCCGATACTTCATCATTGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004456-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(22.4=83.8)
A:
PF0010018=Zona_pellucida=FE(21.2=100)
C2:
PF0010018=Zona_pellucida=FE(32.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCACGACATCATTGATGCA
R:
GTGGTGAAGCTGCCTTCTTGA
Band lengths:
246-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]