RnoEX6035322 @ rn6
Exon Skipping
Gene
ENSRNOG00000031126 | Tecta
Description
tectorin alpha [Source:RGD Symbol;Acc:1309824]
Coordinates
chr8:46610922-46612944:-
Coord C1 exon
chr8:46612742-46612944
Coord A exon
chr8:46611649-46611812
Coord C2 exon
chr8:46610922-46611170
Length
164 bp
Sequences
Splice sites
3' ss Seq
GACCTCCCCTTGATCCGCAGTCC
3' ss Score
8.04
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATTCCCATGACATCATCGACGCAGAGGTGACCTGCAAGGCAGCCCAAATGGAAGTGTCCATATCTAAATGCAAGCTCTTTCAGCTGGGCTTTGAGAGAGAGGGGGTGAGAATCAATGACAGACAGTGCTCTGGCATCGAGGGAGAGGATTTTATCTCCTTTCAGATCAACAACACCAAGGGGAACTGTGGGAACGTCGTGCAG
Seq A exon
TCCAATGGTACTCATATCATGTATAAAAACACAATCTGGATCGAAAGTGCCAACAACACAGGCAACATCATCACGAGGGACCGCACCATCAATGTGGAATTTTCATGCGCGTATGAGCTAGATATCAAGATCTCCTTGGACTCTGTTGTGAAGCCTATGCTAAG
Seq C2 exon
TGTCATCAACCTGACAGTTCCAACCCAAGAGGGCAGCTTCACCACCAAGATGGCGCTCTATAAAAACGCGTCCTACAAACACCCTTACCGCCAGGGGGAGGTCGTGCTGACGACCCGGGATGTGCTCTACGTGGGGGTCTTTGTGGTTGGCGCTGACTCCACACACTTGATTCTCACACTCAACAAATGCTACGCCACCCCGTCCCGCGACAGCAACGACAAACTCCGGTACTTCATCATCGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031126-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(22.4=83.8)
A:
PF0010018=Zona_pellucida=FE(21.2=100)
C2:
PF0010018=Zona_pellucida=FE(32.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATCGAGGGAGAGGATTT
R:
ATCAAGTGTGTGGAGTCAGCG
Band lengths:
244-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]