Special

MmuEX0046908 @ mm9

Exon Skipping

Gene
ENSMUSG00000037705 | Tecta
Description
tectorin alpha [Source:MGI Symbol;Acc:MGI:109575]
Coordinates
chr9:42145189-42147194:-
Coord C1 exon
chr9:42146992-42147194
Coord A exon
chr9:42145898-42146061
Coord C2 exon
chr9:42145189-42145437
Length
164 bp
Sequences
Splice sites
3' ss Seq
GACCTCCCCTTGATCTGCAGTCC
3' ss Score
7.07
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATTCCCATGACATCATCGACGCGGAGGTGACCTGCAAGGCAGCCCAGATGGAAGTGTCCATATCTAAGTGCAAGCTCTTCCAGCTGGGCTTTGAGAGAGAGGGTGTGAGAATCAATGACCGGCAGTGCTCTGGCATCGAGGGCGAGGATTTTATCTCCTTTCAAATCAACAACACCAAAGGGAACTGTGGGAACATCGTGCAG
Seq A exon
TCCAATGGCACTCATATCATGTATAAAAACACAATCTGGATTGAAAGTGCCAACAACACTGGCAACATCATCACGAGGGACCGCACGATCAATGTGGAATTTTCATGCGCTTATGAGCTAGATATCAAGATCTCCTTAGACTCTGTCGTGAAGCCTATGCTAAG
Seq C2 exon
TGTCATCAACCTGACAGTTCCGACCCAGGAGGGCAGCTTCACCACCAAGATGGCACTCTATAAAAATGCTTCCTACAAACACCCTTACCGCCAAGGGGAAGTTGTGCTGACAACTCGGGATGTGCTGTACGTGGGCGTCTTTGTGGTCGGAGCTGACTCTACACACTTGATTCTCACACTCAACAAATGCTACGCCACCCCCTCCCGAGACAGCAACGACAAGCTTCGGTACTTCATCATCGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037705_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0010018=Zona_pellucida=PU(22.4=83.8)

							
A:
PF0010018=Zona_pellucida=FE(21.2=100)

							
C2:
PF0010018=Zona_pellucida=FE(32.5=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000040262





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000125370
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr11:121168054-121168217 
HIGH PSI
HsaEX6005258
(TECTA)
Human
(hg19)
chr11:121038763-121038926 
HIGH PSI
HsaEX6005258
(TECTA)
Rat
(rn6)
chr8:46611649-46611812 
HIGH PSI
RnoEX6035322
(Tecta)
Cow
(bosTau6)
chr15:32334716-32334879 
BtaEX6058742
(TECTA)
Chicken
(galGal4)
chr24:3533133-3533296 
HIGH PSI
GgaEX6025642
(TECTA)
Chicken
(galGal3)
chr24:3567798-3567961 
HIGH PSI
GgaEX6025642
(TECTA)
Zebrafish
(danRer10)
chr5:62500245-62500408 
HIGH PSI
DreEX0078094
(tecta)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CTTCCAGCTGGGCTTTGAGAG

				
R: 
CATCCCGAGTTGTCAGCACAA

				
Band lengths: 
249-413

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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