HsaEX6005258 @ hg19
Exon Skipping
Gene
ENSG00000109927 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:11720]
Coordinates
chr11:121037287-121039634:+
Coord C1 exon
chr11:121037287-121037489
Coord A exon
chr11:121038763-121038926
Coord C2 exon
chr11:121039386-121039634
Length
164 bp
Sequences
Splice sites
3' ss Seq
GACTTCCCCTTGTTCTGCAGTCC
3' ss Score
7.73
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ACTCACATGACATTATCGATGCAGAGGTGACCTGCAAAGCAGCCCAAATGGAAGTGTCCATATCTAAGTGCAAGCTCTTCCAGCTCGGTTTTGAGAGGGAGGGCGTGAGGATCAATGACAGACAGTGCACCGGCATCGAGGGGGAAGATTTTATCTCCTTTCAGATCAACAACACCAAAGGGAATTGTGGAAACATTGTGCAG
Seq A exon
TCCAATGGCACGCATATCATGTATAAAAACACACTCTGGATCGAAAGCGCCAACAACACTGGCAACATCATCACCAGGGACCGCACGATCAATGTGGAATTTTCATGTGCTTATGAGCTGGATATCAAGATCTCCTTGGATTCTGTTGTGAAGCCTATGCTAAG
Seq C2 exon
TGTAATTAACCTGACAGTTCCAACCCAAGAAGGCAGCTTCATCACCAAGATGGCTCTCTACAAAAACGCCTCCTACAAACATCCTTACCGCCAGGGTGAAGTAGTGTTGACGACTCGAGATGTGCTGTATGTAGGGGTTTTTGTGGTTGGAGCTGACGCCACACATTTAATCCTAACACTCAACAAATGCTATGCCACACCCACCCGAGATAGCAATGATAAGCTCCGATATTTCATCATTGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109927-'20-23,'20-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(22.4=83.8)
A:
PF0010018=Zona_pellucida=FE(21.2=100)
C2:
PF0010018=Zona_pellucida=FE(32.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCGTGAGGATCAATGACAG
R:
GCTCCAACCACAAAAACCCCT
Band lengths:
256-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)