DreEX0078094 @ danRer10
Exon Skipping
Gene
ENSDARG00000059558 | tecta
Description
tectorin alpha [Source:ZFIN;Acc:ZDB-GENE-110411-120]
Coordinates
chr5:62498570-62503029:-
Coord C1 exon
chr5:62502827-62503029
Coord A exon
chr5:62500245-62500408
Coord C2 exon
chr5:62498570-62498818
Length
164 bp
Sequences
Splice sites
3' ss Seq
GTGTGCATTTGTGAGTCTAGTCA
3' ss Score
-0.57
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GTGAAGATGACATCATCCAGGCTGAAGTGACCTGTAAGCACGCTCAGATGGAGGTCTCCATCTCTAAGTGCCGTCTCTTCCAGCTGGGCTTTGAGAGGGAGGATGTACGAATCAACGACCAGCACTGCCCTGGTATTGAGGGAGAGGACTTCATCTCCTTCCACATCAACAATACCAAGGGACACTGTGGCTCTATTGTACAG
Seq A exon
TCAAATGGAACACACATTATGTACAAGAACACGGTGTGGATCGAGAGTTTGAACAACACTGGGAGTGTGGTGACGCGCGACAAAATGATCAACGTGGAGTTTTCCTGTGCGTATGAACTGGACATCAAGATATCCTTGGAGACCGTACTGAAGCCAATGCTCAG
Seq C2 exon
TGTCATAAACCTCACACTGCCAACCCAAGAGGGTAACTTCATCACAAAAATGGCCTTATACAAGAACGCCTCATACCGGCACCCGTACCGCGAGGGAGAGGTTGTGCTGAGCACCAGAGACGTTCTGTTTGTGGGGGTGTTTGTGGAAGGAGCAGATGACAAACAGCTTATTCTCATTGTTAACATGTGCTGGGCTACACCATCTCGTTACAGCAATGATCGACTCCGCTACATTATCATAGAGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059558-'22-22,'22-21,23-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(22.4=83.8)
A:
PF0010018=Zona_pellucida=FE(21.2=100)
C2:
PF0010018=Zona_pellucida=FE(32.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAATCAACGACCAGCACTG
R:
CTTCCACAAACACCCCCACAA
Band lengths:
246-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]