MmuEX0046908 @ mm10
Exon Skipping
Gene
ENSMUSG00000037705 | Tecta
Description
tectorin alpha [Source:MGI Symbol;Acc:MGI:109575]
Coordinates
chr9:42337106-42339111:-
Coord C1 exon
chr9:42338909-42339111
Coord A exon
chr9:42337815-42337978
Coord C2 exon
chr9:42337106-42337354
Length
164 bp
Sequences
Splice sites
3' ss Seq
GACCTCCCCTTGATCTGCAGTCC
3' ss Score
7.07
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATTCCCATGACATCATCGACGCGGAGGTGACCTGCAAGGCAGCCCAGATGGAAGTGTCCATATCTAAGTGCAAGCTCTTCCAGCTGGGCTTTGAGAGAGAGGGTGTGAGAATCAATGACCGGCAGTGCTCTGGCATCGAGGGCGAGGATTTTATCTCCTTTCAAATCAACAACACCAAAGGGAACTGTGGGAACATCGTGCAG
Seq A exon
TCCAATGGCACTCATATCATGTATAAAAACACAATCTGGATTGAAAGTGCCAACAACACTGGCAACATCATCACGAGGGACCGCACGATCAATGTGGAATTTTCATGCGCTTATGAGCTAGATATCAAGATCTCCTTAGACTCTGTCGTGAAGCCTATGCTAAG
Seq C2 exon
TGTCATCAACCTGACAGTTCCGACCCAGGAGGGCAGCTTCACCACCAAGATGGCACTCTATAAAAATGCTTCCTACAAACACCCTTACCGCCAAGGGGAAGTTGTGCTGACAACTCGGGATGTGCTGTACGTGGGCGTCTTTGTGGTCGGAGCTGACTCTACACACTTGATTCTCACACTCAACAAATGCTACGCCACCCCCTCCCGAGACAGCAACGACAAGCTTCGGTACTTCATCATCGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037705_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(22.4=83.8)
A:
PF0010018=Zona_pellucida=FE(21.2=100)
C2:
PF0010018=Zona_pellucida=FE(32.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGCTGGGCTTTGAGAG
R:
CATCCCGAGTTGTCAGCACAA
Band lengths:
249-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types