BtaEX6108923 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006263 | GP2
Description
glycoprotein 2 (zymogen granule membrane) [Source:HGNC Symbol;Acc:HGNC:4441]
Coordinates
chr25:18111040-18113299:-
Coord C1 exon
chr25:18113082-18113299
Coord A exon
chr25:18112438-18112586
Coord C2 exon
chr25:18111040-18111285
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTCTTGTTTTTATGCCAAAGAGA
3' ss Score
3.23
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
ATGTGCACAGTTTGCAGCCTCAGCTGGACTGTGGGGACACAGAGATCAAAGTGTCACTGGACAAGTGTCTGCTGGGAAGTCTGGGTTTCGGAGATGAGGTCCATGCCTACCTGCGGGACGGGAACTGGAACTGCAGCAGCCTCAGGCAGAGTGAAGAGGAGAACTGGATATCTGTGACCAATCCCACCCAGGCTGGTGCCTGCGGAAACATTCTGGAG
Seq A exon
AGAAACCAGACCCATGCCATCTACATAAACACGCTCTCCTTAGTCAACGATTTCATCATCAGAGACACCATCCTCAGCATCAACTTCCAGTGTGCCTACCCACTGGACATGAAAGTGAGCCTTCAAATGGCCCTGCAGCCCATCGTAAG
Seq C2 exon
TTCCCTGAACATCACTGTGGATGGGGAGGGAGAGTTCACTGTCAGGATGGCCCTCTTTCAAGACCAGGACTACACGTCTCCTTATGAAGGGACTGCAGTCATGCTGTCTGTTGAATCCATGCTCTATGTGGGCACCATCTTGGAGAGAGGGGACACGTCCCGATTTAACCTGGTGTTGAAGAACTGCTACGCCACGCCCACTGAAGACAAGACTGACCCTGTGAAGTACTTCATCATCAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006263-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(24.7=86.3)
A:
PF0010018=Zona_pellucida=FE(19.2=100)
C2:
PF0010018=Zona_pellucida=FE(32.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAACTGGAACTGCAGCAG
R:
CGTGTCCCCTCTCTCCAAGAT
Band lengths:
256-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]