MmuEX6013542 @ mm10
Exon Skipping
Gene
ENSMUSG00000030954 | Gp2
Description
glycoprotein 2 (zymogen granule membrane) [Source:MGI Symbol;Acc:MGI:1914383]
Coordinates
chr7:119450060-119452344:-
Coord C1 exon
chr7:119452133-119452344
Coord A exon
chr7:119451500-119451648
Coord C2 exon
chr7:119450060-119450305
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTTTTTGTTTTGTGCCAAAGAAA
3' ss Score
3.95
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
ACTCTCAGAGTTTGCAGCCTCTTCTGGACTGTGGAGATAATGAGATCAAGGTGAAGTTGGACAAGTGTTTGCTGGGAGGTATGGGTTTCAAGGAGGAGATCATTGCCTACCTCAATGACCGGAACTGCAATGGTACCATGCAAGATGAGCCCAACAACTGGGTGTCCATGACCAGCCCTGTTGTGGCTAATTACTGTGGGAACATCCTGGAG
Seq A exon
AAAAATGGGACCCATGCCATCTACAGAAACACCCTTTCCTTGGCCACTGACTTTATTATCAGGGACTTTCGTGTCAATGTCAACTTCCAGTGTGCCTACCCACTGGACATGAGCGTCAGCCTCGAAACTGCTCTCCAGCCCATTGTAAG
Seq C2 exon
CTCCCTGACTGTTGATGTGGACGGAGCAGGAGAGTTCAATGTCAAGATGGCCCTCTTCCAAGACCAGAGCTACACAAACCCTTATGAAGGAGCCGAAGTGTTGCTTCCAGTGGAGTCTATACTCTATGTGGGTGTCCTCTTAAATAGAGGGGATACCTCCAGGTTCAAACTGTTGCTGACCAACTGCTATGCCACCCCTTCAGAAGACAGGCATGACCCTGTGAAGTACTTCATCATCAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030954-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(24.1=85.9)
A:
PF0010018=Zona_pellucida=FE(19.4=100)
C2:
PF0010018=Zona_pellucida=FE(32.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTGCTGGGAGGTATGGG
R:
AAGCAACACTTCGGCTCCTTC
Band lengths:
254-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types