HsaEX0028072 @ hg19
Exon Skipping
Gene
ENSG00000169347 | GP2
Description
glycoprotein 2 (zymogen granule membrane) [Source:HGNC Symbol;Acc:4441]
Coordinates
chr16:20329507-20331795:-
Coord C1 exon
chr16:20331584-20331795
Coord A exon
chr16:20330942-20331090
Coord C2 exon
chr16:20329507-20329752
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTTTTTTTGCCAAAGAGA
3' ss Score
4.1
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
ATGTCCACAGTTTGCAGCCTCAGCTAGACTGTGGGCCCAGGGAGATCAAGGTGAAGGTGGACAAATGTTTGCTGGGAGGCCTGGGTTTGGGGGAGGAGGTCATTGCCTACCTGCGAGACCCAAACTGCAGCAGCATCTTGCAGACAGAGGAGAGGAACTGGGTATCTGTGACCAGCCCCGTCCAGGCTAGTGCCTGCAGGAACATTCTGGAG
Seq A exon
AGAAATCAAACCCATGCCATCTACAAAAACACCCTCTCCTTGGTCAATGATTTCATCATCAGAGACACCATCCTCAACATCAACTTCCAATGTGCCTACCCACTGGACATGAAAGTCAGCCTCCAAGCTGCCTTGCAGCCCATTGTAAG
Seq C2 exon
TTCCCTGAACGTCAGTGTGGACGGGAATGGAGAGTTCATTGTCAGGATGGCCCTCTTCCAAGACCAGAACTACACGAATCCTTACGAAGGGGATGCAGTTGAACTGTCTGTTGAGTCCGTGCTGTATGTGGGTGCCATCTTGGAACAAGGGGACACCTCCCGGTTTAACCTGGTGTTGAGGAACTGCTATGCCACCCCCACTGAAGACAAGGCTGACCTTGTGAAGTATTTCATCATCAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169347_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(24.1=85.9)
A:
PF0010018=Zona_pellucida=FE(19.4=100)
C2:
PF0010018=Zona_pellucida=FE(32.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGTGCCTGCAGGAACATT
R:
GTCAGCCTTGTCTTCAGTGGG
Band lengths:
244-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)