HsaEX0028072 @ hg38
Exon Skipping
Gene
ENSG00000169347 | GP2
Description
glycoprotein 2 [Source:HGNC Symbol;Acc:HGNC:4441]
Coordinates
chr16:20318185-20320473:-
Coord C1 exon
chr16:20320262-20320473
Coord A exon
chr16:20319620-20319768
Coord C2 exon
chr16:20318185-20318430
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTTTTTTTGCCAAAGAGA
3' ss Score
4.1
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
ATGTCCACAGTTTGCAGCCTCAGCTAGACTGTGGGCCCAGGGAGATCAAGGTGAAGGTGGACAAATGTTTGCTGGGAGGCCTGGGTTTGGGGGAGGAGGTCATTGCCTACCTGCGAGACCCAAACTGCAGCAGCATCTTGCAGACAGAGGAGAGGAACTGGGTATCTGTGACCAGCCCCGTCCAGGCTAGTGCCTGCAGGAACATTCTGGAG
Seq A exon
AGAAATCAAACCCATGCCATCTACAAAAACACCCTCTCCTTGGTCAATGATTTCATCATCAGAGACACCATCCTCAACATCAACTTCCAATGTGCCTACCCACTGGACATGAAAGTCAGCCTCCAAGCTGCCTTGCAGCCCATTGTAAG
Seq C2 exon
TTCCCTGAACGTCAGTGTGGACGGGAATGGAGAGTTCATTGTCAGGATGGCCCTCTTCCAAGACCAGAACTACACGAATCCTTACGAAGGGGATGCAGTTGAACTGTCTGTTGAGTCCGTGCTGTATGTGGGTGCCATCTTGGAACAAGGGGACACCTCCCGGTTTAACCTGGTGTTGAGGAACTGCTATGCCACCCCCACTGAAGACAAGGCTGACCTTGTGAAGTATTTCATCATCAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169347-'24-23,'24-20,27-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(24.1=85.9)
A:
PF0010018=Zona_pellucida=FE(19.4=100)
C2:
PF0010018=Zona_pellucida=FE(32.4=100)
Main Skipping Isoform:
ENST00000381362fB16502
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGTGCCTGCAGGAACATT
R:
GTCAGCCTTGTCTTCAGTGGG
Band lengths:
244-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development