MmuEX6015043 @ mm10
Exon Skipping
Gene
ENSMUSG00000054672 | 5830411N06Rik
Description
RIKEN cDNA 5830411N06 gene [Source:MGI Symbol;Acc:MGI:2443685]
Coordinates
chr7:140297646-140298383:+
Coord C1 exon
chr7:140297646-140297711
Coord A exon
chr7:140297790-140298104
Coord C2 exon
chr7:140298360-140298383
Length
315 bp
Sequences
Splice sites
3' ss Seq
ATTGTTGACCCCCTTTCCAGAGG
3' ss Score
6.92
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AAAAGACAGAAGTTTCTCAGGATATGGAGCAGATTGCCAACTGCTCATCAACTCTTAGCTGCCCAG
Seq A exon
AGGAAGGTGCACTTCGTGTACTTGGGGGTGAGAACGGCTGCTCTGGACGAGTGGAGCTCTGGCATGGAGGTTCATGGGGCACAGTGTGTGACGATTCCTGGGATCTGGCCGATGCAGAAGTTGTTTGCCGGCAGCTGGGCTGTGGCCCAGCCATAGCTGCCTTGCAGAATGCTGCCTTTGGCCCTGGTTCAGGGCCTGTATGGCTGGATGAAGTGGGATGCCGAGGCAGTGAGCTGTCTCTGGGAGCCTGCCAGGCAGAACCATGGGGATATGGAGACTGCTCCCACAAGGAGGATGCTGGTGTGCGCTGCCTAG
Seq C2 exon
GTATCCCTGGAACCATGGCATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054672-'16-16,'16-14,17-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types