MmuEX6028086 @ mm10
Exon Skipping
Gene
ENSMUSG00000066842 | Hmcn1
Description
hemicentin 1 [Source:MGI Symbol;Acc:MGI:2685047]
Coordinates
chr1:150690554-150697595:-
Coord C1 exon
chr1:150697420-150697595
Coord A exon
chr1:150694837-150694933
Coord C2 exon
chr1:150690554-150690676
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTTTGATTTTTTTACTTGAGATT
3' ss Score
2.32
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
CTCCACCCAATATTATGGGAGAAGAACAGAATGTCTCCGTCCTCATTGGCCAAGCTGTGGAGTTGTTTTGTCAAAGTGATGCTGTTCCTCCCCCTACTCTGATGTGGTTGAAGGATGGCCGCCCTCTGCTGAAGAGACCAGGTCTCAGTATCTCTGAAAACGGAAGTGTGCTTAAG
Seq A exon
ATTGAAGATGCTCAGGCCGGAGACACTGGTCGTTACACCTGTGAAGCCACCAATGTTGCTGGGAAAACGGAGAAGAACTACAACGTTAACGTCTGGG
Seq C2 exon
TACCACCTAGTATTTATGGCTCTGATGAGCTTGTGCAACTTACAGCCATTGAAGGGAATCTTATCACTCTCCTATGTGAATCAAGTGGAATCCCACCCCCAGATCTTACCTGGAAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066842-'47-48,'47-47,48-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(63.6=94.9)
A:
PF0767911=I-set=PD(34.1=90.9)
C2:
PF0767911=I-set=PU(39.1=81.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGGTTGAAGGATGGCCG
R:
AAGATCTGGGGGTGGGATTCC
Band lengths:
183-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types