RnoEX6044618 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:68041566-68059676:-
Coord C1 exon
chr13:68059501-68059676
Coord A exon
chr13:68051954-68052050
Coord C2 exon
chr13:68041566-68041688
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTTGATTTGTTTTATTTGAGATT
3' ss Score
3.49
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
CTCCACCCAATATTATGGGAGAAGAACAGAATGTCTCTGTCCTCATTAGCCAAACTGTGGAGTTATTTTGTCAAAGTGATGCTGTTCCCCCACCTACTCTGATGTGGTTCAAGGATGGCCGCCCTCTGCTGAAGAGACCGGGTCTCAGTATCTCTGAAAATGGAAGTGTGCTTATG
Seq A exon
ATTGAAGATGCTCAGGCCGGAGACACTGGTCGATACACCTGTGAAGCGACAAATGTTGCTGGGAAAACAGAGAAAAACTACAACGTTAACATCTGGG
Seq C2 exon
TACCTCCTAGTATTTATGGCTCTGATGAGCTCGTGCAACTCACAGCCATTGAAGGGAATCTTATCACTCTCCTATGTGAATCAAGTGGAATTCCACCCCCAAATCTTACTTGGAAAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'51-53,'51-52,52-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(63.6=94.9)
A:
PF0767911=I-set=PD(34.1=90.9)
C2:
PF0767911=I-set=PU(39.1=81.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTGGTTCAAGGATGGCC
R:
AGATTTGGGGGTGGAATTCCA
Band lengths:
183-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]