DreEX6046247 @ danRer10
Exon Skipping
Gene
ENSDARG00000016936 | hmcn1
Description
hemicentin 1 [Source:ZFIN;Acc:ZDB-GENE-041014-322]
Coordinates
chr20:34299881-34301298:-
Coord C1 exon
chr20:34301123-34301298
Coord A exon
chr20:34300757-34300853
Coord C2 exon
chr20:34299881-34300003
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTTTCTTTTTTCTAGATA
3' ss Score
11
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
TGCCACCGAACATCATGGGTGAAGAGGTGAACAATACAGTTCTGATGGGTCAGTCGGTGCAGCTGCATTGTCAGAGTGATGCCATCCCTCCACCAGCACTAAGCTGGCGGAAAGACGGCCGGCCGCTCTATAGAAAACCAGGACTGAGTGTGTCAGAGGATGGCAGCTTTCTGAAG
Seq A exon
ATAATCAGTGCTCAGGTTCAAGACACTGGCAGGTATACATGTGAAGCCACCAATGTGGCAGGAAAAACAGAGAAGCACTATAACCTAAATGTCTGGG
Seq C2 exon
TTCCTCCCAGCATCCGTGGGTCAGATGAAGTGTCTTCTCTCACTGTGATTGAGGGGGGTCTGATCACACTTGTGTGCGAGTCCAGTGGGATTCCTCCTCCCAGTCTCATCTGGAAGAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016936-'41-44,'41-43,42-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.024
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(63.6=94.9)
A:
PF0767911=I-set=PD(34.1=90.9)
C2:
PF0767911=I-set=PU(40.7=83.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTAAGCTGGCGGAAAGACG
R:
AGGAGGAATCCCACTGGACTC
Band lengths:
178-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]