GgaEX0007079 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:303143-306898:+
Coord C1 exon
chr8_random:303143-303321
Coord A exon
chr8_random:303619-303715
Coord C2 exon
chr8_random:306776-306898
Length
97 bp
Sequences
Splice sites
3' ss Seq
GGTTTTTGTTTTCTTCCTAGATT
3' ss Score
8.37
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
TAGTTCCACCAAACATCATGGGAGAGGAACAAAATGTCTCTGTGCTCATCAGCCAGGCAGTGGAGCTGCTCTGCCAGAGCAACGCTGTTCCCCTGCCCATGCTGATGTGGCTCAAAGATGGGCGACCCTTGCTGAATAAACCAGGTCTTAGCATCTCTGAAGATGGAAGTGTGCTGAAG
Seq A exon
ATTGAAGGAGCTCAAGTACAGGACACTGGCCGTTACACTTGCGAAGCGACAAATGTTGCTGGGAAAACTAAAAAGAACTATAATGTCAATATCTGGG
Seq C2 exon
TTCCACCAAGTATTTATGGTTCAGATGACACCTCTCAGCTGACAGTAATTGAAGGGAGCCTGATAAGCTTGATATGTGAGTCTACTGGCATCCCACCACCTAGTCTTACCTGGAAAAAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'48-63,'48-62,49-63
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(63.6=93.3)
A:
PF0767911=I-set=PD(34.1=90.9)
C2:
PF0767911=I-set=PU(39.1=81.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGCTGATGTGGCTCAAA
R:
GGTGGGATGCCAGTAGACTCA
Band lengths:
181-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]